3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06776

Details:

PFam ID : PF06776

PFam Domain Description : Invasion associated locus B (IalB) protein

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 238

Average sequence length: 130.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06776	A0L5Q6_MAGSM_47_187	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06776	D8JYL2_HYPDA_75_237	100

Sequence based PCA Plot of the family - PF06776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay