3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06772

Details:

PFam ID : PF06772

PFam Domain Description : Bacterial low temperature requirement A protein (LtrA)

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 368

Average sequence length: 305.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06772	Q8V5P8_9ABAC_7_202	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06772	F0XTP3_9PEZI_209_647	100

Sequence based PCA Plot of the family - PF06772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=73 Length=8
Motif3 Start=110 Length=8
Motif4 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay