3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06771

Details:

PFam ID : PF06771

PFam Domain Description : Viral Desmoplakin N-terminus

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 32

Average sequence length: 82.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06771	Q8V5P8_9ABAC_7_202	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06771	Q1A4K5_9BBAC_8_91	100

Sequence based PCA Plot of the family - PF06771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay