3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06770

Details:

PFam ID : PF06770

PFam Domain Description : Actin-rearrangement-inducing factor (Arif-1)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 25

Average sequence length: 181.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06770	Q8V5P8_9ABAC_7_202	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06770	Q8V5P8_9ABAC_7_202	100

Sequence based PCA Plot of the family - PF06770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=116 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay