3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06762

Details:

PFam ID : PF06762

PFam Domain Description : Lipase maturation factor

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 163

Average sequence length: 360.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06762	D0NCT8_PHYIT_130_642	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06762	D0NCT8_PHYIT_130_642	99.3

Sequence based PCA Plot of the family - PF06762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=520 Length=8
Motif2 Start=42 Length=8
Motif3 Start=490 Length=11
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay