3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06761

Details:

PFam ID : PF06761

PFam Domain Description : Intracellular multiplication and human macrophage-killing

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 351

Average sequence length: 290.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06761	D7KQ73_ARALL_292_507	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06761	A1K514_AZOSB_475_851	100

Sequence based PCA Plot of the family - PF06761 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=362 Length=8
Motif2 Start=267 Length=11
Motif3 Start=24 Length=11
Motif4 Start=141 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay