3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06756

Details:

PFam ID : PF06756

PFam Domain Description : Chorion protein S19 C-terminal

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 10

Average sequence length: 70.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06756	D7Z452_ECOLX_1_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06756	CH19_DROGR_125_196	100

Sequence based PCA Plot of the family - PF06756 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay