3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06751

Details:

PFam ID : PF06751

PFam Domain Description : Ethanolamine ammonia lyase large subunit (EutB)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 198

Average sequence length: 432.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06751	D0SX80_ACILW_11_251	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06751	E0JPZ2_RHIME_66_509	100

Sequence based PCA Plot of the family - PF06751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=35 Length=8
Motif3 Start=46 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay