3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06747

Details:

PFam ID : PF06747

PFam Domain Description : CHCH domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 314

Average sequence length: 35.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06747	B0D3F8_LACBS_42_78	16.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06747	F2U6T3_9EUKA_33_67	70

Sequence based PCA Plot of the family - PF06747 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay