3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06745

Details:

PFam ID : PF06745

PFam Domain Description : KaiC

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 949

Average sequence length: 208.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06745	A3MTI5_PYRCJ_3_114	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06745	Q8TU39_METAC_1_159	100

Sequence based PCA Plot of the family - PF06745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=1 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay