3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06743

Details:

PFam ID : PF06743

PFam Domain Description : FAST kinase-like protein, subdomain 1

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 95

Average sequence length: 69.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06743	B7PY68_IXOSC_34_105	31.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06743	C3Y286_BRAFL_432_504	100

Sequence based PCA Plot of the family - PF06743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay