3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06739

Details:

PFam ID : PF06739

PFam Domain Description : Beta-propeller repeat

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 419

Average sequence length: 36.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06739	B2GJD2_KOCRD_50_287	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06739	Q8F9B2_LEPIN_425_461	96.6

Sequence based PCA Plot of the family - PF06739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay