3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06737

Details:

PFam ID : PF06737

PFam Domain Description : Transglycosylase-like domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 355

Average sequence length: 74.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06737	Q2TLT9_9CAUD_1481_1564	41.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06737	F1B2Q4_9CAUD_1719_1776	100

Sequence based PCA Plot of the family - PF06737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay