3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06733

Details:

PFam ID : PF06733

PFam Domain Description : DEAD_2

Number of Sequence in 50% Dataset : 225

Number of Sequence in Full Dataset : 1055

Average sequence length: 147.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06733	E1FYK7_LOALO_196_300	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06733	D8LPY7_ECTSI_256_494	100

Sequence based PCA Plot of the family - PF06733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay