3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06730

Details:

PFam ID : PF06730

PFam Domain Description : FAM92 protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 44

Average sequence length: 178.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06730	D0MTG5_PHYIT_6_209	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06730	B4MVF9_DROWI_1_222	100

Sequence based PCA Plot of the family - PF06730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay