3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06728

Details:

PFam ID : PF06728

PFam Domain Description : GPI transamidase subunit PIG-U

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 174

Average sequence length: 309.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06728	A5K7V5_PLAVS_1_390	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06728	D8TKV5_VOLCA_6_353	100

Sequence based PCA Plot of the family - PF06728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=55 Length=8
Motif3 Start=226 Length=8
Motif4 Start=384 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay