3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06726

Details:

PFam ID : PF06726

PFam Domain Description : Bladder cancer-related protein BC10

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 40

Average sequence length: 59.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06726	A4RKV5_MAGO7_1_28	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06726	A4RKV5_MAGO7_1_28	79

Sequence based PCA Plot of the family - PF06726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay