3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06725

Details:

PFam ID : PF06725

PFam Domain Description : 3D domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 705

Average sequence length: 68.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06725	B4RBF3_PHEZH_111_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06725	Q1Q7F3_9BACT_295_379	99.8

Sequence based PCA Plot of the family - PF06725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=1 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay