3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06720

Details:

PFam ID : PF06720

PFam Domain Description : Bacteriophage phi-29 early protein GP16.7

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 103.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06720	A3YGC0_9GAMM_38_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06720	VG167_BPPZA_1_130	100

Sequence based PCA Plot of the family - PF06720 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay