3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06719

Details:

PFam ID : PF06719

PFam Domain Description : AraC-type transcriptional regulator N-terminus

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 530

Average sequence length: 151.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06719	A3YGC0_9GAMM_38_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06719	Q15TL4_PSEA6_20_185	100

Sequence based PCA Plot of the family - PF06719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=11
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay