3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06715

Details:

PFam ID : PF06715

PFam Domain Description : Gp5 C-terminal repeat (3 copies)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 85

Average sequence length: 23.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06715	E5FIJ9_9CAUD_533_556	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06715	F0J1E4_ACIMA_532_555	80

Sequence based PCA Plot of the family - PF06715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay