3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06706

Details:

PFam ID : PF06706

PFam Domain Description : Citrus tristeza virus 6-kDa protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 32.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06706	B7GEH2_PHATC_81_318	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06706	O10470_9CLOS_1_51	100

Sequence based PCA Plot of the family - PF06706 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay