3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06703

Details:

PFam ID : PF06703

PFam Domain Description : Microsomal signal peptidase 25 kDa subunit (SPC25)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 151

Average sequence length: 151.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06703	F0VJZ0_NEOCA_57_205	67.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06703	E3KTK3_PUCGT_56_223	100

Sequence based PCA Plot of the family - PF06703 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=18
Motif3 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay