3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06701

Details:

PFam ID : PF06701

PFam Domain Description : Mib_herc2

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 101

Average sequence length: 62.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06701	B4Q9E8_DROSI_8_34	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06701	D2XMR7_SACKO_109_173	100

Sequence based PCA Plot of the family - PF06701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=18
Motif2 Start=53 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay