3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06699

Details:

PFam ID : PF06699

PFam Domain Description : GPI biosynthesis protein family Pig-F

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 140

Average sequence length: 175.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06699	D8R445_SELML_31_196	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06699	A2QV00_ASPNC_42_212	100

Sequence based PCA Plot of the family - PF06699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=110 Length=8
Motif4 Start=193 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay