3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06689

Details:

PFam ID : PF06689

PFam Domain Description : ClpX C4-type zinc finger

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 574

Average sequence length: 40.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06689	D6U4U1_9CHLR_344_391	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06689	D6U4U1_9CHLR_344_391	95.1

Sequence based PCA Plot of the family - PF06689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=8
Motif2 Start=29 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay