3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06684

Details:

PFam ID : PF06684

PFam Domain Description : Amino acid synthesis

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 147

Average sequence length: 172.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06684	B5IYN9_9RHOB_1_66	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06684	B6JJL1_OLICO_10_186	100

Sequence based PCA Plot of the family - PF06684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=31 Length=18
Motif3 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay