3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06673

Details:

PFam ID : PF06673

PFam Domain Description : Lactococcus lactis bacteriophage major capsid protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 173.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06673	Q1DES2_MYXXD_98_221	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06673	Q38300_BPLC2_131_477	100

Sequence based PCA Plot of the family - PF06673 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay