3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06668

Details:

PFam ID : PF06668

PFam Domain Description : Inter-alpha-trypsin inhibitor heavy chain C-terminus

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 62

Average sequence length: 175.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06668	E4X661_OIKDI_149_245	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06668	F1Q5C3_DANRE_959_1155	100

Sequence based PCA Plot of the family - PF06668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=107 Length=8
Motif4 Start=150 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay