3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06662

Details:

PFam ID : PF06662

PFam Domain Description : D-glucuronyl C5-epimerase C-terminus

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 67

Average sequence length: 173.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06662	Q5C2L0_SCHJA_1_97	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06662	D8GPM5_CLOLD_537_733	100

Sequence based PCA Plot of the family - PF06662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=83 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay