3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06657

Details:

PFam ID : PF06657

PFam Domain Description : Centrosome microtubule-binding domain of Cep57

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 57

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06657	E5AXV1_9VIRU_41_817	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06657	E3JT67_PUCGT_809_888	96.4

Sequence based PCA Plot of the family - PF06657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay