3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06653

Details:

PFam ID : PF06653

PFam Domain Description : Tight junction protein, Claudin-like

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 66

Average sequence length: 152.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06653	E3N7B8_CAERE_37_192	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06653	Q95YB5_CAEEL_1_121	100

Sequence based PCA Plot of the family - PF06653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay