3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06645

Details:

PFam ID : PF06645

PFam Domain Description : Microsomal signal peptidase 12 kDa subunit (SPC12)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 158

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06645	F0V8D5_NEOCA_22_104	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06645	F0V8D5_NEOCA_22_104	100

Sequence based PCA Plot of the family - PF06645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay