3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06644

Details:

PFam ID : PF06644

PFam Domain Description : ATP11 protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 143

Average sequence length: 237.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06644	E3X6X0_ANODA_14_150	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06644	D8QLW5_SCHCM_29_348	100

Sequence based PCA Plot of the family - PF06644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=43 Length=8
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay