3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06632

Details:

PFam ID : PF06632

PFam Domain Description : DNA double-strand break repair and V(D)J recombination protein XRCC4

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 70

Average sequence length: 231.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06632	A9RXM1_PHYPA_97_328	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06632	Q6PBP2_DANRE_4_355	98.5

Sequence based PCA Plot of the family - PF06632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay