3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06630

Details:

PFam ID : PF06630

PFam Domain Description : Enterobacterial exodeoxyribonuclease VIII

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 32

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06630	B3I8E5_ECOLX_1_168	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06630	D3RB14_KLEVT_2_194	96.7

Sequence based PCA Plot of the family - PF06630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay