3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06629

Details:

PFam ID : PF06629

PFam Domain Description : MltA-interacting protein MipA

Number of Sequence in 50% Dataset : 211

Number of Sequence in Full Dataset : 464

Average sequence length: 223.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06629	A9D0F9_9GAMM_1_104	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06629	B3PFB9_CELJU_37_305	100

Sequence based PCA Plot of the family - PF06629 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=249 Length=8
Motif3 Start=2 Length=8
Motif4 Start=193 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay