3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06628

Details:

PFam ID : PF06628

PFam Domain Description : Catalase-related immune-responsive

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 1223

Average sequence length: 67.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06628	D2W0I1_NAEGR_50_360	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06628	Q15WV5_PSEA6_430_496	99.8

Sequence based PCA Plot of the family - PF06628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=11
Motif2 Start=6 Length=17
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay