3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06623

Details:

PFam ID : PF06623

PFam Domain Description : MHC_I C-terminus

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 201

Average sequence length: 27.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06623	Q6MG34_RAT_343_360	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06623	E9PT38_RAT_294_311	99.5

Sequence based PCA Plot of the family - PF06623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay