3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06616

Details:

PFam ID : PF06616

PFam Domain Description : BsuBI/PstI restriction endonuclease C-terminus

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 59

Average sequence length: 269.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06616	E0QQ93_9ACTO_1_102	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06616	E0U5M0_CYAP2_385_704	100

Sequence based PCA Plot of the family - PF06616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=151 Length=8
Motif2 Start=228 Length=8
Motif3 Start=78 Length=8
Motif4 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay