3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06609

Details:

PFam ID : PF06609

PFam Domain Description : Fungal trichothecene efflux pump (TRI12)

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 98

Average sequence length: 418.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06609	C0S053_PARBP_97_306	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06609	Q8NJ87_FUSAS_1_598	100

Sequence based PCA Plot of the family - PF06609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=18
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay