3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06603

Details:

PFam ID : PF06603

PFam Domain Description : UpxZ family of transcription anti-terminator antagonists

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 43

Average sequence length: 99

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06603	C6IUY1_9BACE_1_45	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06603	E4VVN3_BACFR_5_111	100

Sequence based PCA Plot of the family - PF06603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay