3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06602

Details:

PFam ID : PF06602

PFam Domain Description : Myotubularin-related

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 360

Average sequence length: 120.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06602	B7Q8P0_IXOSC_327_390	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06602	B3S6A5_TRIAD_194_365	100

Sequence based PCA Plot of the family - PF06602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=27 Length=8
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay