3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06594

Details:

PFam ID : PF06594

PFam Domain Description : Haemolysin-type calcium binding protein related domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 434

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06594	Q2HNR3_RBDV_1_274	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06594	C4FZK5_ABIDE_878_930	100

Sequence based PCA Plot of the family - PF06594 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay