3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06588

Details:

PFam ID : PF06588

PFam Domain Description : Muskelin N-terminus

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 38

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06588	E6ZYW8_9BASI_25_71	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06588	MDE6_SCHPO_2_206	100

Sequence based PCA Plot of the family - PF06588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay