3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06584

Details:

PFam ID : PF06584

PFam Domain Description : DIRP

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 72

Average sequence length: 103.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06584	C4Q2W8_SCHMA_46_163	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06584	C4Q2W8_SCHMA_46_163	100

Sequence based PCA Plot of the family - PF06584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=18
Motif2 Start=60 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay