3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06581

Details:

PFam ID : PF06581

PFam Domain Description : Mad1 and Cdc20-bound-Mad2 binding

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 15

Average sequence length: 203.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06581	E5SJQ1_TRISP_42_173	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06581	C5EWY0_9FIRM_1_58	100

Sequence based PCA Plot of the family - PF06581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay