3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06580

Details:

PFam ID : PF06580

PFam Domain Description : Histidine kinase

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 2107

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06580	E5SJQ1_TRISP_42_173	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06580	E4KRK4_9PORP_781_876	100

Sequence based PCA Plot of the family - PF06580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=23
Motif2 Start=40 Length=8
Motif3 Start=80 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay