3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06578

Details:

PFam ID : PF06578

PFam Domain Description : YOP proteins translocation protein K (YscK)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 24

Average sequence length: 189.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06578	Q2SH66_HAHCH_6_229	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06578	E3BLT6_9VIBR_8_221	100

Sequence based PCA Plot of the family - PF06578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay