3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06574

Details:

PFam ID : PF06574

PFam Domain Description : FAD synthetase

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 1338

Average sequence length: 148.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06574	E3ZX25_LISSE_10_60	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06574	E1L3P2_9ACTN_71_240	100

Sequence based PCA Plot of the family - PF06574 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=14
Motif2 Start=131 Length=14
Motif3 Start=40 Length=8
Motif4 Start=7 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay